RnoEX6017444 @ rn6
Exon Skipping
Gene
ENSRNOG00000001596 | Atp5mc3
Description
ATP synthase membrane subunit c locus 3 [Source:RGD Symbol;Acc:620052]
Coordinates
chr3:60812429-60813869:-
Coord C1 exon
chr3:60813796-60813869
Coord A exon
chr3:60813507-60813612
Coord C2 exon
chr3:60812429-60812506
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTTTCGCTCCCCAGAGA
3' ss Score
7.97
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GCCGCACCGCGCTTGCGCACCCAGCCCCACTGCTTCGACCTCTGCCGCCGCTGCTGCCGCCGCCGCCTCCGGAG
Seq A exon
AGAGGAAGCAGGAGAGGAGCCCACATCGCCTGTCACCTATATCCACGCCGCGCCGCCAGGAAGAAAGATGTTCGCCTGCGCCAAGCTCGCCCGCACCCCTGCTCTG
Seq C2 exon
ATCCGAGCTGGATCCAGAGTTGCATATAGACCAATTTCTGCATCAGTATTATCTCGACCAGAGACTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001596-'3-4,'3-1,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCCCCACTGCTTC
R:
CCAGTCCTAGTCTCTGGTCGA
Band lengths:
130-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]