DmeEX0001223 @ dm6

Exon Skipping

Gene

Description

The gene ATP synthase, subunit C is referred to in FlyBase by the symbol DmelATPsynC (CG1746, FBgn0039830). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (2 unique). Gene sequence location is 3R:31216145..31219630. Its molecular function is described by: proton-transporting ATP synthase activity, rotational mechanism. It is involved in the biological process described with: ATP synthesis coupled proton transport; proton transmembrane transport. 22 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed during early larval stages, during late pupal stages, in stages of adults of both sexes.

Coordinates

chr3R:31217740-31219630:-

Coord C1 exon

chr3R:31219536-31219630

Coord A exon

chr3R:31218943-31219048

Coord C2 exon

chr3R:31217740-31217944

Length

106 bp

Sequences

Splice sites

3' ss Seq

CTCCGTCTATATCTTTGCAGAGC

3' ss Score

9.78

5' ss Seq

GCCGTAAGT

5' ss Score

10.11

Exon sequences

Seq C1 exon

TTTTTCCCAGCTCCCGCTGACGGCCACACTTAGCACCCCCCAAAAGTCAGCGAAATTGTCAAATTCGTTTTACTGTTGTGAAGGGTTCGTTCGAA

Seq A exon

AGCCGTGCGCTAGCTTCAATTTTGTCGTAAGCAAAACAAAAAGGAAATTCAACCGAAAATGTTCGTGTCGACAGTCTCTCGCATTGCCCCAGTTGCCAGGAGCGCC

Seq C2 exon

TTCCTCGCCAACTCCAAGCAGTACTTGCGACCATTGAGCAGCGCCATCATCAGCCAGAGCCAGACTTTGGCCGCTCAGAACACAACCCCCGTTGCATTGCTGCCACAGATCAGGTCATTCCAGACCTCGCCAGTCACGCGTGACATTGACTCGGCCGCCAAATTCATTGGTGCTGGTGCCGCAACAGTCGGTGTCGCTGGATCCG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0039830-'0-3,'0-1,13-3

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features