GgaEX1000237 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQ71]
Coordinates
chr27:3494070-3496305:-
Coord C1 exon
chr27:3495383-3496305
Coord A exon
chr27:3495065-3495122
Coord C2 exon
chr27:3494070-3494245
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTCTCATGATTAGTAA
3' ss Score
5.2
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CAGTGTTCGAAGCGATCTTTTTTAGGAGCGAATGGGAAAAGGGAGAGGCCGACACGGCGGCCGCAACAGCCTCCGGCGCACCGGAGAGTACCGTGAGAGGACAGCTGAGCACAGCCCACGCTGCTACCGCCGCCACCACCTCTGTGGTCACCTCTATGGTTCGAGGAGCGGCCCCACGCGCCTCATGGTCCTCTGGGAAACCTCCAGGCCGTCAGCCAATCGCAAAGCGCGTAGCGAAAATAACTAACCAATGGAAGCTCGCATCATGGCACGGTTCTCCCGCCCCCGTGCTGCTATCCCGGATGCTAGTGGGAGGAGCTTGCTGGACTGCGGCCAATGGGGAGCGCGGATGTTGTCCCAGAGTGCCGCGCGCCGCGCGCAGCGGTAGCCAATCGGCGCGGAGGACGCTGGGGGACACGGCAAGGTGAGCGGGGTGGGGGCGCGGGCGCGCTCTCTCTTCACAGCCGTCACCGTCGCAGCCCCGAGAGGACACCGTGCAG
Seq A exon
TAATAGGTAAAGCAAGATGCAGACGGCTTCTTTGGCTCTCCTCAGCTCTCCGGCTCTG
Seq C2 exon
CCAGCTGGTGTGTCCTATCCACAGCTGACCCGCCGTGAGTTCCAAACTAGTGCAGTTTCCCGGGATATTGACACTGCTGCTAAGTTCATTGGTGCTGGTGCTGCCACAGTCGGGGTGGCTGGTTCAGGAGCAGGTATTGGGACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001330_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0013716=ATP-synt_C=PU(65.3=54.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTCTTCACAGCCGTCA
R:
AGCAGCAGTGTCAATATCCCG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]