DreEX6016388 @ danRer10
Exon Skipping
Gene
ENSDARG00000056008 | atp5g1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:ZFIN;Acc:ZDB-GENE-040426-1966]
Coordinates
chr3:23471388-23473848:-
Coord C1 exon
chr3:23473622-23473848
Coord A exon
chr3:23472324-23472371
Coord C2 exon
chr3:23471388-23471462
Length
48 bp
Sequences
Splice sites
3' ss Seq
AACATCTTTGTTTTCCACAGGCT
3' ss Score
10.61
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACACCCAAACCGCCTTCCTGACAGCGCACATGATTGGGTTTGTCTTATTTACTGACATGCCTTGTAGCCAACCAGAGGATGCAAACGTGACGTTCTGTCCAATCACAAGCGAGGACGTACTTCCGAAGCTTATAAATGACAAGGTGACAGATTTTACAGCGTACTCATTGCCTGTAGCTACGAGCTTGTCCCTGTAACCCTGGGCCCTTGTGTGCTTTATCAAATAG
Seq A exon
GCTTCAAACATGTACGCGTGTGCTAAGTTTGTCTCCTCACCTGCTGTG
Seq C2 exon
ATCCGTGGTGGATCCAGGGCTTTGGCACGGCCCATTTCAGTGGTGTTCAGCAGACCTGAAGCAAGATCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056008-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACTCATTGCCTGTAGCT
R:
TGCTTCAGGTCTGCTGAACAC
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]