BtaEX6008940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002944 | ATP5G3
Description
Bos taurus ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) (ATP5G3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034692]
Coordinates
chr2:21702150-21703732:+
Coord C1 exon
chr2:21702150-21702201
Coord A exon
chr2:21702389-21702500
Coord C2 exon
chr2:21703655-21703732
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCTTTGCCTCCGCAGAGA
3' ss Score
8.69
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
AGCCCCATTCCTTCGACCTCTGCCGCAGCGGCCGCCGCCACCTCCCTGGAAG
Seq A exon
AGAGGAAGCGGGAGAGGAGCCCACGTCTCCTGTCACCCAAGTCCTCCAGCTGCGCTGCCCCGAAGAGTGCAAGATGTTCGCCTGCGCCAAGCTTGCCTGCACCCCAGCTCTG
Seq C2 exon
ATCAGAGCTGGATCCAGAGTTGCATACAGACCAATTTCTGCCTCAGTGTTATCTCGACCAGAGACTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002944-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCATTCCTTCGACCTC
R:
CTCTCCAGTCCTAGTCTCTGGT
Band lengths:
130-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]