HsaEX6016819 @ hg38
Exon Skipping
Gene
ENSG00000154518 | ATP5G3
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:843]
Coordinates
chr2:175180098-175184607:-
Coord C1 exon
chr2:175181656-175184607
Coord A exon
chr2:175181355-175181466
Coord C2 exon
chr2:175180098-175180178
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCTTTTCCTCCGCAGAGA
3' ss Score
9.75
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
TTCCTTGAAATAAATATCTTCGCTTTGCTGGGGACCCTAGTTTCCTGTTAAGTAGTGAATGACCCTTCTTTCCTCCCGCCAGCCACAGTCCTATTTCACAGAGGAAGAGAATGACCAGCAAGTCAACTTCTACTACAGAGAAGCAGCAACTGATAAAAGGCCAAATCTTACAAGGTGCCAACGTGAAGAAAAAGGCCCACTATCCTGCAGCCAACTCATATCAAAAGTTAATCTGTTTAGTCCTCTCTGCCGGGGTGAATCTACAGTTTTTCTTTTTGTCTCCCTCTTGCCCCATCACCAGGTGGTTGTCGTTGTCCTTCCCGGCTAGTTGCCAATAAAGTTGTTACAAAGTGACCTTGAGTGTCTTCCTTGGTGCACCCGAAACCCCGCCTTCTTCATCCGGGTGCTGCGGCGCGAATAAGAGCCGGACCGCGCTTGCGCATTGAGTCCCACTCCTTCGACCTCTGCCGCAGCCCGTGCCGCCGCCGCCTCCTGGGAAG
Seq A exon
AGAGGAAGCGGGAGAGGAGCCCACGTCGCCTGTCACCCAATATCTCCAGCCGCGCAGTCCCGAAGAGTGTAAGATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCTCTCTG
Seq C2 exon
ATCCGAGCTGGATCCAGAGTTGCATACAGACCAATTTCTGCATCAGTGTTATCTCGACCAGAGGCTAGTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154518-'0-4,'0-1,2-4
Average complexity
ME(1_2-3_1[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTCCCTCTTGCCCCAT
R:
ATGCAACTCTGGATCCAGCTC
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains