HsaEX6016819 @ hg19
Exon Skipping
Gene
ENSG00000154518 | ATP5G3
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843]
Coordinates
chr2:176044826-176049335:-
Coord C1 exon
chr2:176046384-176049335
Coord A exon
chr2:176046083-176046194
Coord C2 exon
chr2:176044826-176044906
Length
112 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCTTTTCCTCCGCAGAGA
3' ss Score
9.75
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
TTCCTTGAAATAAATATCTTCGCTTTGCTGGGGACCCTAGTTTCCTGTTAAGTAGTGAATGACCCTTCTTTCCTCCCGCCAGCCACAGTCCTATTTCACAGAGGAAGAGAATGACCAGCAAGTCAACTTCTACTACAGAGAAGCAGCAACTGATAAAAGGCCAAATCTTACAAGGTGCCAACGTGAAGAAAAAGGCCCACTATCCTGCAGCCAACTCATATCAAAAGTTAATCTGTTTAGTCCTCTCTGCCGGGGTGAATCTACAGTTTTTCTTTTTGTCTCCCTCTTGCCCCATCACCAGGTGGTTGTCGTTGTCCTTCCCGGCTAGTTGCCAATAAAGTTGTTACAAAGTGACCTTGAGTGTCTTCCTTGGTGCACCCGAAACCCCGCCTTCTTCATCCGGGTGCTGCGGCGCGAATAAGAGCCGGACCGCGCTTGCGCATTGAGTCCCACTCCTTCGACCTCTGCCGCAGCCCGTGCCGCCGCCGCCTCCTGGGAAG
Seq A exon
AGAGGAAGCGGGAGAGGAGCCCACGTCGCCTGTCACCCAATATCTCCAGCCGCGCAGTCCCGAAGAGTGTAAGATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCTCTCTG
Seq C2 exon
ATCCGAGCTGGATCCAGAGTTGCATACAGACCAATTTCTGCATCAGTGTTATCTCGACCAGAGGCTAGTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154518-'0-4,'0-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTCCCTCTTGCCCCAT
R:
ATGCAACTCTGGATCCAGCTC
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)