MmuEX6102213 @ mm9
Exon Skipping
Gene
ENSMUSG00000018770 | Atp5g3
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
Coordinates
chr2:73747921-73749382:-
Coord C1 exon
chr2:73749299-73749382
Coord A exon
chr2:73749012-73749117
Coord C2 exon
chr2:73747921-73747998
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTTTTCGCTCCGCAGAGA
3' ss Score
9.38
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
AGAGCCGCACCGCGCTTGCGCGCCCAGCCCCACTGCTTCGACCTCTGCCGCCGCCACTGCCGCCGCCTCGGGAGGTAAGCGAAG
Seq A exon
AGAGGAAGCGGGAGAGGAGCCCACGTCGCCTGTCACCTAGATCCACGCCGCGCCGCCAGGAAGAAAGATGTTCGCCTGCGCCAAGCTCGCCCGCACCCCCGCTCTG
Seq C2 exon
ATCCGAGCTGGATCCAGAGTTGCATATAGACCAATTTCTGCATCAGTGTTATCTCGGCCAGAGACTAGGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018770-'1-3,'1-1,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCACTGCTTCGAC
R:
CTCTCCAGTCCTAGTCTCTGGC
Band lengths:
138-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: