RnoEX0013202 @ rn6
Exon Skipping
Gene
ENSRNOG00000015320 | Atp5mc2
Description
ATP synthase membrane subunit c locus 2 [Source:RGD Symbol;Acc:620051]
Coordinates
chr7:144267176-144272578:-
Coord C1 exon
chr7:144272562-144272578
Coord A exon
chr7:144269421-144269490
Coord C2 exon
chr7:144267176-144267253
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATGTTGCTTCTCATTTCCAGCTC
3' ss Score
9.3
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCTACCCTGGGAGCAG
Seq A exon
CTCTTCTGCCTTTGCCCCTCACCCCTGAAAAATGTATGCCTGCTCCAAGTTCGTCTCTACCCGCTCCCTG
Seq C2 exon
ATCAGGAGCACCTCTCAGCTGCTGAGCCGTCCGCTCTCTGCAGTGGAGTTAAAGCGACCACAGATGCCCACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015320-'9-10,'9-3,14-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]