DreEX6020743 @ danRer10
Exon Skipping
Gene
ENSDARG00000009447 | atp5g3b
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b [Source:ZFIN;Acc:ZDB-GENE-020814-1]
Coordinates
chr6:10599367-10600495:-
Coord C1 exon
chr6:10600405-10600495
Coord A exon
chr6:10600104-10600193
Coord C2 exon
chr6:10599367-10599444
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACTGTCGGCTTTTCCCACAGAGA
3' ss Score
10.71
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TCAAACACGTCATGCGTGCATCCGGGTGCCTGATTAAATAGAGGGTCGGGCATGCGCAGTAGCTCCTCAGCGGTTCGACCTCTGCAGCCGG
Seq A exon
AGACAGACGCGGGTTTATTCCTCACCACAGTCAGCGAGCTCTACCAAAATCATGTACGCCTGTGCAAAGTTCGTGTCCACACCCGCACTG
Seq C2 exon
GTCCGCTCTGGTTCAAGGGCGCTGTACAGACCACTCTCTGCGTCTGTGCTCTCCAGGCCAGATGTCAGCTCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009447-'0-4,'0-0,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCGTGCATCCGGG
R:
CTCTGCAGAGCTGACATCTGG
Band lengths:
161-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]