HsaEX0006930 @ hg19
Exon Skipping
Gene
ENSG00000135390 | ATP5G2
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842]
Coordinates
chr12:54063655-54070109:-
Coord C1 exon
chr12:54069837-54070109
Coord A exon
chr12:54066360-54066429
Coord C2 exon
chr12:54063655-54063732
Length
70 bp
Sequences
Splice sites
3' ss Seq
TACTGCTTCTGTAATTCCAGCTC
3' ss Score
4.32
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCACGTTACGGATCGGCTTACTCCGCGGAGTTGGCCTCATTTCTGCAGTCGGCGCTCCCTGTAGTTTCTCCTCTCGAACGCCAGGTGGAGCAACCGGCCGGATACCGCCACAGCCCTGGCAGGCGGCGCTGTGATGCCTGAGCTGATCCTGTATGTTGCAATCACTCTATCCGTGGCTGAGCGACTCGTTGGCCCGGGTCACGCATGCGCTGAGCCTTCCTTTCGCTCTTCCCGCTGCTCCGCCCCTCTCTGTCTTCTCTGCAGTGGGAGCAG
Seq A exon
CTCTCCTGCCACAGCTCCTCACCCCCTGAAAATGTTCGCCTGCTCCAAGTTTGTCTCCACTCCCTCCTTG
Seq C2 exon
GTCAAGAGCACCTCACAGCTGCTGAGCCGTCCGCTATCTGCAGTGGTGCTGAAACGACCGGAGATACTGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135390_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGATGCCTGAGCTGATC
R:
CAGCTGTGAGGTGCTCTTGAC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)