HsaEX6023377 @ hg19
Exon Skipping
Gene
ENSG00000159199 | ATP5G1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841]
Coordinates
chr17:46970127-46971811:+
Coord C1 exon
chr17:46970127-46970202
Coord A exon
chr17:46970771-46970818
Coord C2 exon
chr17:46971734-46971811
Length
48 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCCCCCTCTGCAGACT
3' ss Score
10.53
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCAATGAGAATGGAGAAGGTCCAGGACACGTGGGTGGGGGAAGCTGAGCGCTGAGACCAAGGGCTAAAGCTGGGAG
Seq A exon
ACTGAAAAAATGCAGACCGCCGGGGCATTATTCATTTCTCCAGCTCTG
Seq C2 exon
ATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159199-'0-5,'0-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGTCCAGGACACGT
R:
AATTCACTGGGCTATTCAAGAAGGA
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)