BtaEX0005295 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27278845-27279741:+
Coord C1 exon
chr23:27278845-27279074
Coord A exon
chr23:27279173-27279391
Coord C2 exon
chr23:27279488-27279741
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTCTTCCATTACAGTTC
3' ss Score
10.82
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
TCGTGCGGCCCCTCCGGGCAGCCGAGGCCGCGGAAGGGGGGGAGCCCATAGAGGAAGAGGTAGGCCCCGGAGCCTGCTCTCTCTACCCAGGGCCCAGGCGTCCTGGGCCCCCCAGCTTCCTACCGGACTGACCAGCCCTCCTATCCCTTGTGTCCCCTCCCAGGGGGAGGCCCCCGCTGAGATGGGGGCGCTGGTGCTGGAGAAGGAGCCCAGAGGAGCCACCGAGAGAG
Seq A exon
TTCATGGCTCTTTGGGGGACACCTCTCGTAGTGAGGAGACCCTGCCCAAGGCCAACCCCGATTCCCTGGAGACTGCTGGCCCCTCATCCCCAGCCTCTGTCACAGTCACTGTCGGCGATGAGGGGGCTGACACCCCTGTAGGGGCCACACCACTCATTGGGGATGAACCCGAGAATCTCGAGGGAGATGGGGACCTCCATGGGGGTCGCATCCTGCTGG
Seq C2 exon
GCCATGCCACAAAGTCGTTCCCGTCTTCCCCCAGCAAGGGGGGTGCCTGTCCCAGCCGAGCCAAGATGTCAATGACAGGGGCCGGAAAATCACCCCCATCAGTTCAGAGTTTGGCTATGAGGCTGCTAAGTATGCCGGGCGCCCAAGGGGCGCCAGCAGCAGGGCCTGAACCCCCTCCGGCCACAGCCAGCCCAGAGGGGCAGCCCAAGGTTCATCGAGCCAGGAAAACCATGTCCAAACCAGGAAATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCCCATAGAGGAAGAGG
R:
CTGATGGGGGTGATTTTCCGG
Band lengths:
293-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development