RnoEX0031265 @ rn6
Exon Skipping
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4576747-4577485:+
Coord C1 exon
chr20:4576747-4576813
Coord A exon
chr20:4576921-4577127
Coord C2 exon
chr20:4577229-4577485
Length
207 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCCCTCCCCGACAGTTC
3' ss Score
10.48
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGGGAGGCCCCCGCTGAGATGGGGGCGCTGCTGCTGGAGAAGGAGCCCCGAGGAGCCGCCGAGAGAG
Seq A exon
TTCATGGCTCTTTGGGGGACACCTCTCATAGTGAGGAGACCCTTCCCAAGGCCAACCCCGACTCCTTGGAGCCTACCGGCCCCTCCTCTCCGGCCTCTGTCACTGTCACCGTCGGCGATGAGGGGGCTGACACCCCTGTCGGGGCCACACCGCTCATCGGGGAGGAACCCGAGAACCTGGAGGGAGATGGGGGTCGAATCCTGCTGG
Seq C2 exon
GCCATGCCACAAAGTCATTCCCCTCTTCCCCCAGCAAGGGGGGTGCCTGTCCCAGTCGGGCCAAAATGTCAATGACAGGGGCAGGAAAGTCGCCCCCCTCGGTCCAGAGTTTGGCCATGAGGCTGTTGAGCATGCCTGGGGCCCAGGGAGCTGCAACTGCTGGGCCTGAGCCCCCTCCGGCAACAACTGCCGGCCAGGAGGGGCAGCCCAAAGTACACCGAGCTCGGAAAACCATGTCCAAGCCTAGCAACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTGGAGAAGGAG
R:
GTTGCTAGGCTTGGACATGGT
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]