BtaEX0005296 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27279488-27280730:+
Coord C1 exon
chr23:27279488-27279741
Coord A exon
chr23:27280507-27280591
Coord C2 exon
chr23:27280690-27280730
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCTCTTGGCCCCCAGCCC
3' ss Score
8.01
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCCATGCCACAAAGTCGTTCCCGTCTTCCCCCAGCAAGGGGGGTGCCTGTCCCAGCCGAGCCAAGATGTCAATGACAGGGGCCGGAAAATCACCCCCATCAGTTCAGAGTTTGGCTATGAGGCTGCTAAGTATGCCGGGCGCCCAAGGGGCGCCAGCAGCAGGGCCTGAACCCCCTCCGGCCACAGCCAGCCCAGAGGGGCAGCCCAAGGTTCATCGAGCCAGGAAAACCATGTCCAAACCAGGAAATGGACAG
Seq A exon
CCCCCAGTCCCTGAGAAGCGGCCCCCTGAAGTGCAGCATTTCCGCATGAGTGATGACGTGCACTCGCTGGGGAAGGTGACCTCAG
Seq C2 exon
ATGTGGCCAAAAGGAGGAAGCTGAACTCAGGAGGTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGGCTATGAGGCTGCT
R:
GCTTCCTCCTTTTGGCCACAT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development