RnoEX0031273 @ rn6
Exon Skipping
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4577229-4581170:+
Coord C1 exon
chr20:4577229-4577485
Coord A exon
chr20:4580955-4581036
Coord C2 exon
chr20:4581133-4581170
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTTGTTCCTTCACGCTCCAGCCT
3' ss Score
4.63
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCCATGCCACAAAGTCATTCCCCTCTTCCCCCAGCAAGGGGGGTGCCTGTCCCAGTCGGGCCAAAATGTCAATGACAGGGGCAGGAAAGTCGCCCCCCTCGGTCCAGAGTTTGGCCATGAGGCTGTTGAGCATGCCTGGGGCCCAGGGAGCTGCAACTGCTGGGCCTGAGCCCCCTCCGGCAACAACTGCCGGCCAGGAGGGGCAGCCCAAAGTACACCGAGCTCGGAAAACCATGTCCAAGCCTAGCAACGGACAG
Seq A exon
CCTCCAGTCCCTGAGAAGCGGCCCCCTGAAGTCCAGCATTTCCGCATGAGTGACGACATGCATCTGGGAAAGGTGACTTCAG
Seq C2 exon
ATGTGGCCAAACGGAGGAAGTTGACCTCGGGCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-'5-9,'5-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGAGCATGCCTGGGG
R:
CTGCCCGAGGTCAACTTCCTC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]