BtaEX0005315 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57144635-57146279:+
Coord C1 exon
chr5:57144635-57145228
Coord A exon
chr5:57145326-57145466
Coord C2 exon
chr5:57146094-57146279
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGGAAAACTTGTCTTTCCAGCTC
3' ss Score
5.2
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTCACACCTCCATCACCCCAACGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAGTACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCACAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTCTATGATTCCTTTCCCGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCCAGCATCCAGACCTTTGCACCCTCCCAGGAGGTAGGCAGCGGTATCCATCCTGATGAGGCAGCAGAAAAGGAACTTACTTCCGTCGTGACAGAGAATGGTGCTGGCTTAGTAGGCAGCCTGGAGCTGGAAGAAGAGCAGCCAG
Seq A exon
CTCTCTGCAGTGGAGGCTGATTTGCATGTTGGTGATTAGCAGAGCCAAGTGGCTGGTGTTTTTGTGGCAGCAGCACCAGCTCGAGAGTGGGAGTGCAAATTATTTCAAGCTCATGCAGAGCTGCTGGCCTGGAGAGGGCAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAACGGCTCCGTCCCTTCTGTGGAATCATTACACCAGGAGGTCTCAGTCTTGGTCCCTGATCCCACAGTGAGCTGCTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGTCTCTCTCGAGCCCTTCAACACTCTGGCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=1.000 C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000038215fB958
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCGTGACAGAGAATGGTG
R:
CAGAGTGTTGAAGGGCTCGAG
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development