BtaINT0025073 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57144635-57146279:+
Coord C1 exon
chr5:57144635-57145228
Coord A exon
chr5:57145229-57146093
Coord C2 exon
chr5:57146094-57146279
Length
865 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTTCTCCTGGGGTATCCTAGAAC
3' ss Score
4.88
Exon sequences
Seq C1 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAACGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAGTACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCACAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTCTATGATTCCTTTCCCGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCCAGCATCCAGACCTTTGCACCCTCCCAGGAGGTAGGCAGCGGTATCCATCCTGATGAGGCAGCAGAAAAGGAACTTACTTCCGTCGTGACAGAGAATGGTGCTGGCTTAGTAGGCAGCCTGGAGCTGGAAGAAGAGCAGCCAG
Seq A exon
GTATAACTCATGTGGGTCCATGAGCTGGGTTGGGAGAGGGAAAATGGGGCTGTCGGGGGCAGTGGCTTTTTGAGGTGAGGAAAACTTGTCTTTCCAGCTCTCTGCAGTGGAGGCTGATTTGCATGTTGGTGATTAGCAGAGCCAAGTGGCTGGTGTTTTTGTGGCAGCAGCACCAGCTCGAGAGTGGGAGTGCAAATTATTTCAAGCTCATGCAGAGCTGCTGGCCTGGAGAGGGCAGGTGGGCGAGCCCGAAACAGCCCCAACAGACACCCTGCATCAAGAAAGGCTTCTTCTAAGATATAGGAAGGGGTTGGAGCATCAGCAAGAGGCAAAGAGGCCAATTTGATTTGACTGTGGCAGAGCCAGACTGGCTGCTAAAGTGGGCTGAGCCCTAAGTAGTGATTGGCACATGAAGGAGGGAAGGAATAGGCAGAGCATACCATTCTTGTCTACTCAGTCTCCTTTCTTTTTTGTTGTTCTTAGCATTGGTGCATGTGCAGTCCCTCTCATCTTTTCCCTCAGAATATAATTTGCTATTGATTGCAAGTACAAGGGATGACCACCCTGTAAAGTCACAGGATGTTTTCTCTAACACCTGTTCCCACTGAATGGGGGAAAATAGCTGAAAACATGATGGGTTCTTGTCTCAGACCCCACTCTTCTTTTCCCTTTTTATCTGCTGTAAGATCTTACACATCTTTGTTTAATCAAAGTTCTTGGTATTTTCGGTACCCAACATAGAACTGGCACCCATAAATGTTGAAAGAATGATCATCTGTCCCTCTAGCAAAGATTGCCTACTATAGCTGACTGAACCCATTGAAGGTACTGACTTTGACTTTTGCCTTCTCCTGGGGTATCCTAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAACGGCTCCGTCCCTTCTGTGGAATCATTACACCAGGAGGTCTCAGTCTTGGTCCCTGATCCCACAGTGAGCTGCTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGTCTCTCTCGAGCCCTTCAACACTCTGGCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCATGGGGCTTAACTTCG
R:
GGGATCAGGGACCAAGACTGA
Band lengths:
353-1218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]