HsaINT0016811 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56613953-56615607:-
Coord C1 exon
chr12:56615014-56615607
Coord A exon
chr12:56614139-56615013
Coord C2 exon
chr12:56613953-56614138
Length
875 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TCTCTCCTGTGATTTCCTAGAAC
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAGCGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAATACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCATAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTTGATTCACAAGAACTGTATGATTCCTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCTAGCATTCAAACCTTTGCACCCTCCCAGGAGGTAGGCAGTGGTATCCATCCTGATGAGGCAGCAGAAAAGGAGATGACTTCAGTTGTGGCAGAGAATGGCACTGGCTTGGTAGGCAGCTTGGAGCTGGAAGAAGAGCAGCCAG
Seq A exon
GTATAACTGGGTTGGTGAACTGGGTGGGGAAAGGAAAAATGGAGCTCGGGGGGGATAGTGGCTTTTTGAGGTGAGAAAAACTTGTCTTTCCAGCTCTCTGCAGTGGAGGCTGATTTGCATGTTGGTGATTAGCAATTAGCAGAGCCAAGTGGCTGGTGTTTTTGTGGCAGCAGCACCAGCTCGCGAGTGGGAGTGCAAATTATTTCAAGCTCATGCAGAGCTTCTGGCCTGGAGAGGGCAGGTGGGCGAGCCCGAAACAGCCCCAACAGACACCCTGCATCAAGAAAGGCTTCTTTCAAAATATACGGAGTGGTTAGGGTCTAGCAGCGGGCATTGAGGCTGTTTTAACTGACTGTGGCAGGATCAGACTGGCTGTTAAAGTCGTCTGAGCCCAATGTAGTGATTGGCATGCGAAGGAGGGAAGGAAGCAGGCAGAGCATATCATTATTTGTCTACTCAGTTTCCTTTTTTTTGTTGTTTAGCATTAGTACACGTGACAGCCCCTCTCATCTTTTCCCTCAAAATAGATAAAAGCTTAGCTTCCAGTTGATTCCTGGTACAAGGGTAACCACCACTCTGTAAAATTACAGGATGTTTTCTCGTTTCCCAATGGATGGAGGAGATATCTGAGAACATGATAGAGATGTTGTATCAGACCCCACTCTCTTTTCCTCTCTTTGCCTGCTGTAGGATTGATTTTACCAGCACATCTCTGCTCAGAGTATCTTGATGTGATCGGTTCCCAGCAATGAACTGGCCGCAATAAATGTTGAATGAATGAACATCCTTCTAGCAAAGATTGACTGCCTAGTATAGCTAAGTGAACCAATATAAGGCACTGATTTTGACTTTTGGTCTCTCCTGTGATTTCCTAG
Seq C2 exon
AACTGAAGATGTGTGGCTACAATGGCTCTGTCCCTTCTGTGGAATCGTTACACCAAGAGGTCTCAGTCCTGGTCCCTGACCCCACAGTGAGCTGTTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGACTCTCTGGAGCCCTTCAACTCTCTGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCCCCACAGACTTCTC
R:
GGGCTCCAGAGAGTCTTCACT
Band lengths:
344-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development