HsaINT0016811 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:57007737-57009391:-
Coord C1 exon
chr12:57008798-57009391
Coord A exon
chr12:57007923-57008797
Coord C2 exon
chr12:57007737-57007922
Length
875 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TCTCTCCTGTGATTTCCTAGAAC
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAGCGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAATACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCATAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTTGATTCACAAGAACTGTATGATTCCTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCTAGCATTCAAACCTTTGCACCCTCCCAGGAGGTAGGCAGTGGTATCCATCCTGATGAGGCAGCAGAAAAGGAGATGACTTCAGTTGTGGCAGAGAATGGCACTGGCTTGGTAGGCAGCTTGGAGCTGGAAGAAGAGCAGCCAG
Seq A exon
GTATAACTGGGTTGGTGAACTGGGTGGGGAAAGGAAAAATGGAGCTCGGGGGGGATAGTGGCTTTTTGAGGTGAGAAAAACTTGTCTTTCCAGCTCTCTGCAGTGGAGGCTGATTTGCATGTTGGTGATTAGCAATTAGCAGAGCCAAGTGGCTGGTGTTTTTGTGGCAGCAGCACCAGCTCGCGAGTGGGAGTGCAAATTATTTCAAGCTCATGCAGAGCTTCTGGCCTGGAGAGGGCAGGTGGGCGAGCCCGAAACAGCCCCAACAGACACCCTGCATCAAGAAAGGCTTCTTTCAAAATATACGGAGTGGTTAGGGTCTAGCAGCGGGCATTGAGGCTGTTTTAACTGACTGTGGCAGGATCAGACTGGCTGTTAAAGTCGTCTGAGCCCAATGTAGTGATTGGCATGCGAAGGAGGGAAGGAAGCAGGCAGAGCATATCATTATTTGTCTACTCAGTTTCCTTTTTTTTGTTGTTTAGCATTAGTACACGTGACAGCCCCTCTCATCTTTTCCCTCAAAATAGATAAAAGCTTAGCTTCCAGTTGATTCCTGGTACAAGGGTAACCACCACTCTGTAAAATTACAGGATGTTTTCTCGTTTCCCAATGGATGGAGGAGATATCTGAGAACATGATAGAGATGTTGTATCAGACCCCACTCTCTTTTCCTCTCTTTGCCTGCTGTAGGATTGATTTTACCAGCACATCTCTGCTCAGAGTATCTTGATGTGATCGGTTCCCAGCAATGAACTGGCCGCAATAAATGTTGAATGAATGAACATCCTTCTAGCAAAGATTGACTGCCTAGTATAGCTAAGTGAACCAATATAAGGCACTGATTTTGACTTTTGGTCTCTCCTGTGATTTCCTAG
Seq C2 exon
AACTGAAGATGTGTGGCTACAATGGCTCTGTCCCTTCTGTGGAATCGTTACACCAAGAGGTCTCAGTCCTGGTCCCTGACCCCACAGTGAGCTGTTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGACTCTCTGGAGCCCTTCAACTCTCTGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTCCCCACAGACTTCTC
R:
GGGCTCCAGAGAGTCTTCACT
Band lengths:
344-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)