RnoINT0024804 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2531098-2533240:+
Coord C1 exon
chr7:2531098-2531691
Coord A exon
chr7:2531692-2533054
Coord C2 exon
chr7:2533055-2533240
Length
1363 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TCTCTCCTGGGATTGCCTAGAAC
3' ss Score
4.56
Exon sequences
Seq C1 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAATACCCTGGGGGGCAATACCCGCTCAACGGTATCCTTGGGGGCAGCCAACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCGTGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCACAGACTTCTCCAATGCTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGGTGTAAGCAGTGACCTCCATCCTGATGAGGCAGCGGAAAAGGAGCTGACCTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAACTGGAGGAAGAGCAGCCAG
Seq A exon
GTATAACTGGGTCTGTGAGCTGAGCTGGGTGTGAGAGGGGAAGTGGGGCTGTGGGGACAGTGGCTTTTTGAAGTGAGGAAAACTTGTCTTTCCAGCTCTCTACAGTGGAGGCTGATTTGCATGTTAGTGTTAGCAGAGCCAAATGGCTGGTGTTTCTGTGGTGGCAGCAGCACCAGTTCAAGAGTGGGAGTGCAAATTATTCCAAGCTCATGCAGAGCTGCTGGCCTGGAGAGGGCAGGTGGGCAATGGGCAAGCCTGCAGCAGCCCAGACACACTGCATCAAGAATGGCTTCTTGGGCTGGAGATGTAGCTTAAAGGGTAGGGTGTTTGTGTAGCATGCGGAAATGGGGCCTTGGGTTCTGGCTCGTCAGCCATACTGGCAAATGGTGTATCTCAGCCCTCGGGAGGTAGAAGTAGATGCAGTAGTTGTTGAAGGTCAACCTAAGACACACAAGACCCAGTCTCATGGAAGGGTGGGTGGGTCAGGGTTTCCTCTGAAGTAGATGAAATGGCAACAACATAAACAGAGAGCACTAAGCCATGAAGATATCCTAGCTGGGGCTGGAATAGGTGTCGCTTGAAAGAGTTGCCTGAGCACTTGCTGTAGCCACCTGGTACAGCTAACGTGGGAGCTTCAGTTTTGACTTCACCCATAGTAGTGACTAGCTTATAAACCTGAGAAGAAGATAGTCTGAGTGCATCATTGTTTGTCTATTAAACTCCCTTTCTTTCTTTTTTTTAATCTTTTTCCTTTTTTTTTTTTTTTTTGGGTTATATTAATAATGACAATCTTTTTTGTTTCCCTAAAAGTAGATTAAAAAAAATGTAGTTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCTAGCTCCAAAAAAAAGAACCAAAAAAAAAAAAAAATGTAGTTTATAATCAATATAAGGGTGGCTACCCTATATTAAAAAAAGAAATAATTTTTCTGTTCCACTTGTTGGGAAAAATAAGTATATGATAGACTCTTGTCTTAGGCCTACTCTTTCTTCCTCTTTGCATGATGTATAATTTGTTTTAGGAATATACCTGGATAGGATCTGTTCCTAGCATATAGCTAGAAATAAAGGTTGATTGAATGAACATCTTGTTTTTAAAGCAAAGTTAGAGTTTATTAAGAGAATGTTTAACAGATTTGAGCACCAATATGGCTGTGGGAGGTCCATTTAGGGAAGAGCAGTCCATACTGTGTGCATATGTGGACTTCATTAAATAGTTGCCTGGACACCTGCTATACACCCAGTATAGCTAAACTGAAGGCTTCAGTTTTGACTTTCGGTCTCTCCTGGGATTGCCTAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTGCACCAAGAAGTCTCGGTCCTGGTCCCTGACCCCACAGTGAGCTGTCTGGATGATCCTTCACATCTTCCTGAGCAACTGGAAGACACTCCAATCCTCAGTGAAGACTCCCTCGAGCCCTTTGACTCTCTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACAGACTTCTCCAATGC
R:
CTGCTGCCAGAGAGTCAAAGG
Band lengths:
357-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]