MmuINT0024131 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127547811-127549823:+
Coord C1 exon
chr10:127547811-127548404
Coord A exon
chr10:127548405-127549637
Coord C2 exon
chr10:127549638-127549823
Length
1233 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTCCTGGGATTGATGCCTAGAAC
3' ss Score
1.93
Exon sequences
Seq C1 exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACAATACCCGCTCAACGGTATCCTTGGGGGCAACCGACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGATCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACTTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGGAAGAGCAGCCAG
Seq A exon
GTATAACTGGGTCTGTGAGCTGGGAGTGGAGAGGGGAAGTGGGGTTGGGGGGGGGTGCACAGTAGCTTTTTGAAGTGAGGAAAACTTGTCTTTCCAGCTCTCTGCAGTATAGGCTAATTTGCATGTTGATGTAAGCAGAGCCAAATGGCTGGGGTTTTAGTGCAGCAGCACCAGTTCAAGAGTGGGAGGCAAATTATCCCAAGCTTGTCATGCAGAGCTGCTGGCCTGGAGAGGGCTGGTGGGTGATGGGCAAGCCTGAAGTAGCCAGGCAGACTCCATCAGAAATGGCTTCTTGGGCTAGGGGTGTATCTTAGTGGGTAGCATGCTTGTGTAGCATGCATAAATGGGGCCTTGGGGTCCACCATAATGGCAAATCCTGTAATCTCAGCCCTTGGGAGGTGGAGGTAGAAGGAGTAGTTCAAGGTCAAGCCCAGATACATAAGACCCAGTCTCAAGAAAGGGTGGGACAGGGTTGCCCTTTAAATAGATGAAATGGCTACAACATAAACAGAGCAGTGAAGCCATGAAGCTATCTTAGTTGAGGCAAGAATAGGTGCTGCTTGAAAGAGTTGCCTGAACACCTGATCCAGCTACATTGGAGGCATCATCAGCTTCCTCCATAGTGGTGACTGGCTTATGAATTCGAGAAGAAAATAATCAGAGTGGATCATTGCTTATCTGTTAAGCTACCTCCCTCCCCCCATCCCCTCCCCCTCTCTCTTTCTTTCTTTCTTTTTGTTTATATTAATATATGACAATCTTTTATTTCCCTAAAGTAAATAAAATCTTAGTCTGTAGTTCATATTCAGTGTAAGGGTGGCTACCCTATTTAAAAAAAAAAAAAACATTTTCTCTGTTCCAGTTGTTGGGAAAACTGACTAGATATATGGTAGACTTCTTGTCTCAGGCCTTACTCTTCCTCTTTGCATGATGCATAATTGGTTTTAGGAATATGTCTGGATACAATCTGTTCCTAGCATAGAGCTAGAAATAAAGGTTGATTGAATTGAATGAACATCTTATTTTTAAAGCAGTTAGAGTTTATTGAGAGAATGTTTAACAGATTTGAGCACCAGTGTGGCTGGAGGAGGGCCATTTAGGACAGAGCAGTCCATACCATGTACATATGTGAGCTTCATTAAAGAGTTGTCTGGACACCTACTGTAACACCTAATATAGCTAAATTGAAGGTTTCAGCTTTGACTTTCCGTCTCTCCTGGGATTGATGCCTAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGGAGCCCTTTGACTCTCTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=NA C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCATGGGGCTTAACTTCG
R:
GGACCAGGACGGAGACTTCTT
Band lengths:
345-1578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: