BtaEX0005964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015081 | C11H9ORF142
Description
Bos taurus chromosome 11 open reading frame, human C9orf142 (C11H9orf142), mRNA. [Source:RefSeq mRNA;Acc:NM_001100300]
Coordinates
chr11:106232136-106233013:-
Coord C1 exon
chr11:106232811-106233013
Coord A exon
chr11:106232681-106232741
Coord C2 exon
chr11:106232136-106232286
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGACTGCCCCTGCCCCGCAGTGT
3' ss Score
9.02
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GAGGCGCCGCAGATCGGCGGGCGCCCCGGGCCCGCAGGCGCCCCAGCCGCGGAGCCCTGCCCGCCGGATCCCTCCGCCCGCCGAGGCGCCATGGTGCCGCCGCCTCTCTGCACGCTGCCGCCGGGCCCCGGACCCCCGCGCTTCGTGTGCTACTGCGAGGGGGAGGGCGGCGGGCCCGGGGAACGCGGCGGCTTCAACCTCTG
Seq A exon
TGTGACGGACGCCGCGGAGCTCTGGAGCACCTGCTTCACGCCGGACCGCCTGGCGGCCCTG
Seq C2 exon
GAAGACAGAGCGTCCCTGACCCTTTCAGGGGGCCCCTCGGCGCTGGAACTTGACCTGTCCAAGGTGCCGGGCCCAGAGGCAGCCTCCAGGTTGCAGACACTGACACTGGGCTTGGCGGAGCGTGTGTGCAGCTTGGAGCGGCGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015081-'0-5,'0-0,1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.451
Domain overlap (PFAM):
C1:
PF153841=DUF4610=PU(60.7=89.5)
A:
PF153841=DUF4610=FE(35.7=100),PF153841=DUF4610=PU(3.3=19.0)
C2:
PF153841=DUF4610=PD(0.1=0.0),PF153841=DUF4610=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGGCTTCAACCTCTG
R:
CAAGCCCAGTGTCAGTGTCTG
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development