RnoEX0063641 @ rn6
Exon Skipping
Gene
ENSRNOG00000015294 | Paxx
Description
PAXX, non-homologous end joining factor [Source:RGD Symbol;Acc:1306215]
Coordinates
chr3:2679958-2680622:-
Coord C1 exon
chr3:2680300-2680622
Coord A exon
chr3:2680168-2680228
Coord C2 exon
chr3:2679958-2680007
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGACAGCCCCTCCCACCCAGTGT
3' ss Score
3.57
5' ss Seq
CTCGTGCGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
CCCCAGTCTGGATTCCGGAAACAACGTCAACCTTGAGTACCGCCGGTCCCTGCAGTCTTGTCCTTCCGTCCCTCTAGACACCAGAAGTTCCGCCTCTGAACGGACGTCTTAGCTTGCGAGTCACCGAGTTCATACTTCTGCGCAGGCGCCCTGAGCCTGTCTCTGGCTTGGCTCTTGCGGCGAGACCGCCCTGCTGTCATGGCTCCTCCGCCCTTGTCGCTGCCGCTTTGCATTCTGCCGCCGGGCTCCGGCTCTCCCCGCTTGGTGTGCTACTGCGAGCCGGAGAATGGTGGAGACTGGGACCGCGACGATTTCAACCTCTA
Seq A exon
TGTGACGGACGCCGCGGAGCTCTGGAGCACCTGCTTCTCGCCTGACAGCCTGGCGACGCTC
Seq C2 exon
AAAGCCCGATTTGGCCTAAGTGGGACTGAGGATATCCATTCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015294_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=PU(17.3=81.0)
A:
PF153841=DUF4610=FE(10.2=100)
C2:
PF153841=DUF4610=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGCTTTGCATTCTGC
R:
ATCCTCAGTCCCACTTAGGCC
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]