BtaEX0006517 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112247521-112248585:-
Coord C1 exon
chr8:112248502-112248585
Coord A exon
chr8:112248209-112248397
Coord C2 exon
chr8:112247521-112247610
Length
189 bp
Sequences
Splice sites
3' ss Seq
GACAAACTGTCATTTCTCAGAAA
3' ss Score
7.16
5' ss Seq
TGCGTAAGA
5' ss Score
5.78
Exon sequences
Seq C1 exon
ATAAACAGTGCACCATGTTTTACAGCACGTCGAACACCAAGCTTCAGAAAGTCTGTGAAGGAGTAACGTGCAAATGTATCGAAG
Seq A exon
AAATGTAATCTCATCTGGTGGAAAGTCATTCCTCGAGCACTGTAAGGCTGCATCGCGACGGCTCCAGAACAACCCGATAGTCCCACTGTGCGGAGAAACACCATCAGGCGGTTGTTGGGTATCGGAAAGACAACATGATGTGACATTCTTACCTTTTACCTGGTCTTTTTGGTGCAACAGGACCATTGC
Seq C2 exon
CTGACTGTGGGCAAATGCAGGCAGAATTGGACCTGACAATCTCTGCAGCTACTAGAAAGGAAACAGCATGTAAACCGGAGATTGCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=24.1)
A:
NO
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Inclusion Isoform:
ENSBTAT00000016204fB1235
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCACCATGTTTTACAGC
R:
CGTATGCAATCTCCGGTTTACA
Band lengths:
170-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development