BtaINT0029318 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112247521-112248585:-
Coord C1 exon
chr8:112248502-112248585
Coord A exon
chr8:112247611-112248501
Coord C2 exon
chr8:112247521-112247610
Length
891 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCGTCTTTCACAAAATCCAGCTG
3' ss Score
4.54
Exon sequences
Seq C1 exon
ATAAACAGTGCACCATGTTTTACAGCACGTCGAACACCAAGCTTCAGAAAGTCTGTGAAGGAGTAACGTGCAAATGTATCGAAG
Seq A exon
GTAAACTTCGTTTACTGTGTTCAGGCTGTATACTTGTTTAACGCAGCCACTCATAATCTGGGGCTAATCTGGGGGGAGCTGTTTGACAAACTGTCATTTCTCAGAAATGTAATCTCATCTGGTGGAAAGTCATTCCTCGAGCACTGTAAGGCTGCATCGCGACGGCTCCAGAACAACCCGATAGTCCCACTGTGCGGAGAAACACCATCAGGCGGTTGTTGGGTATCGGAAAGACAACATGATGTGACATTCTTACCTTTTACCTGGTCTTTTTGGTGCAACAGGACCATTGCGTAAGAGAACAGCGGCTCTGGAATGAGCCACTATCTCCTCTCTCCTTCCCCTGGCCCTCCCCAGTTAGAGACGCTCTCCATTCAATTTTTTGCCAATCAAGGCAGCTTTATTGGCCAAAGAAAAGCCCCAGAACTCAACAGTAATCAACTGCGGACTCCATGAGGGTCTGAGTTGATTTTGGTTTTCTTTTGTTTTTCAAAATCCTTAAAATCTACACTTTTTCTAGGCACATATTTCTCCCTCTTACAGCATAAGTCGGTCATCAGTTTGGTTCCTTCAAGAGATTTTTGATTACACTCAAAATGGGAAAATGTCCTCCTTTCTTCAGTGAAGCATATACATTTCTGAAGAGCTCAATGTGGAGTGACTACCCATTCTAAGTCCCGTGTTCAAGATTTTGGTTTTTTTGGTTTTGGTTTTGCTTTGCATATTGTTTCACTTTATGGAAGAGGAGAAAATGGGGACAGGTCTTAGGAATCTGATATTTGTAAGATTATATTGGATTGTCTCAGGGCAGATGAGGAAAAACTGTGTTTACTCCCAAAGGTGTCCGTTCCTTATGTTAACCTAACTCGTGCCGTCTTTCACAAAATCCAG
Seq C2 exon
CTGACTGTGGGCAAATGCAGGCAGAATTGGACCTGACAATCTCTGCAGCTACTAGAAAGGAAACAGCATGTAAACCGGAGATTGCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=24.1)
A:
NA
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]