HsaINT0024236 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:120960248-120961565:-
Coord C1 exon
chr9:120961482-120961565
Coord A exon
chr9:120960338-120961481
Coord C2 exon
chr9:120960248-120960337
Length
1144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCAATTTTCACAAAATCCAGCTG
3' ss Score
2.38
Exon sequences
Seq C1 exon
ATAAACAGTGTACCATGTTTTATAGCACTTCCAATATCAAAATTCAGAAAGTCTGTGAAGGAGCCGCGTGCAAGTGTGTAGAAG
Seq A exon
GTAAACTTTATTTAACATATTTAGGCTGCATGCTTATTTAAAGCAGTCGTTCATAACCTGAGGTTAATCTGGGGGACACTGTTTGGTAAACTGTTCTTTCTCAGAAGTAGAAATGCTATCTCAGCTAATTGAAAGCTAATGATTCCTTGAGCATTGTAAAACTACATTTTCACAGTTCCTGAACAACCTGATAGTTCATGCTGTACAGAGGCAGGGAAACACCATCGAGAGGGTTGTTGAATATTATAGGGGCAACATGATGTGAGATTTTACTTTCACCTAGTCTTTTTATCATATAAGACAAGAGGCTCAGCACTGAACCACTAGCTTCTGTTCCTTTTCTCTTATACTTCCCAGTTAATGGAATTCGGTTTATTGTCCAGTTCCATTTAGTCTTTCCTAAATTGAAGAAAGCCTTCTTGGCCAAGGAAAAGATCCAGAACTCACCAATAATCAACAGCTGGCTCCATGAGGGTCTCAGTTAGTTTTGGTTTTTTCAAAATCCTCAATATCTACACATTTTCTAGGTACTTATTGTGCCATTTTATAGCTATAAATCAGTCACATTATCATTTTGGGTCCTTCAAAGGACTTCTGATTATACTCAAAATGGAAAATTTCCCCCTTTCATCAAGGGAACCACATACATTTCTAAAGACCTGAATGTGGAGTAGCCACCCAGTCTAACAATAAGTCTTATGCCAGGGGTGTCCAATCTTTTGGCTTCAGTGGGCCACATTGGAAGAAGAATTGTCTTGGGCCATACATAAAATACGCTAACACTAACAATAGCTAATGAGCTAAAACAAAAATCACAAGAAAAATTTCATAATATTTTAAGAAAGTTTACGAATTTGTGTTGTGCCGCATTCGAAGCTGCCCTGGGCTGTGTGCTGCCCACGGGCCATGGGTTAGACAAGCTTGTGACATGCTCAAGATTTTGTTTTTTGTTTTTGTTTGTTTTGTTTTCTTTATGTAATATTTCACTTTATGAAAGAAAAGAAAATGGGCAGGTCTTAGAAATCTGACATTTGTAAGGTTATATTGGGTTGTCTCTGGGCTCATGAGAAACCGTGTTTACTCCTGGAAAGAGTGTCTACTTCTTTCCATTAACCTTATTTTTACCAATTTTCACAAAATCCAG
Seq C2 exon
CTGATTGTGGGCAAATGCAGGAAGAATTGGATCTGACAATCTCTGCAGAGACAAGAAAACAAACAGCATGTAAACCAGAGATTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=24.1)
A:
NA
C2:
PF0175916=NTR=PU(9.0=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development