MmuINT0076161 @ mm10
Intron Retention
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34989149-34989957:-
Coord C1 exon
chr2:34989874-34989957
Coord A exon
chr2:34989239-34989873
Coord C2 exon
chr2:34989149-34989238
Length
635 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCCTTCTCTACTCGATCCAGCTG
3' ss Score
6.38
Exon sequences
Seq C1 exon
ATAAGCAGTGCACCATGATTTATAGCATTTCTGACACCAGGCTTCAGAAAGTCTGTGAAGGAGCAGCTTGCACATGTGTGGAAG
Seq A exon
GTAAGCGCCTGCTCAGTCTGCCTTTGCCTGGCCAAGAAATCCTTTCTCTGAAGTAGATACATAATTGCAGCTGACTGAAAAGTGACAATTCCTTACAGCTCCCAAACACCTGGATGCAACACTGTTCAAGAACAGACAAAGGCCACCCAGATGGCTGTTTGGGGGGGGGGGGGGGGGTCCAGGGGACACAATGTGCTTTCCTTTTTACTTTCACCTACTCCCCCCCCCCAAAGGACAGTAGCCAAAGAGAACAGAGGCGGGGCTTGGCCACCACGTATTTTCCTCTCTCTTTTAATTCTGGGGGATCATTTTATGTTCCATTAGACTCCAAAAGTGACAAGTTACTCTCTACTCCCTTCCTTCAAGGGAAGGATGTGCATTTCTGAAGCGCTGGCTGTGGAACAAATAACCATGAGATCATAAGTCCATGTTCAAGACTTTGGTCAGCTGGGTTCACTTTCATTGTAAAATGTTTCCTTTCATTGAAGAGAAGAAAATGGACAGGTCTTAGGAATAATGAAGTTCCTATATGTGATTCTAGATTGCCTCAGGGCTCGTTAGAGATTGCTCACTCCCACAGAGAATGCCTGCTTCAGTACACTAACCTCACTCTCACCCTTCTCTACTCGATCCAG
Seq C2 exon
CTGACTGTGCGCAACTGCAGGCAGAAGTAGACCTAGCCATCTCTGCAGACTCCAGAAAAGAGAAAGCCTGTAAACCAGAGACTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874:ENSMUST00000028233:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=24.1)
A:
NA
C2:
PF0175916=NTR=PU(9.1=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types