HsaINT0024236 @ hg19
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123722526-123723843:-
Coord C1 exon
chr9:123723760-123723843
Coord A exon
chr9:123722616-123723759
Coord C2 exon
chr9:123722526-123722615
Length
1144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCAATTTTCACAAAATCCAGCTG
3' ss Score
2.38
Exon sequences
Seq C1 exon
ATAAACAGTGTACCATGTTTTATAGCACTTCCAATATCAAAATTCAGAAAGTCTGTGAAGGAGCCGCGTGCAAGTGTGTAGAAG
Seq A exon
GTAAACTTTATTTAACATATTTAGGCTGCATGCTTATTTAAAGCAGTCGTTCATAACCTGAGGTTAATCTGGGGGACACTGTTTGGTAAACTGTTCTTTCTCAGAAGTAGAAATGCTATCTCAGCTAATTGAAAGCTAATGATTCCTTGAGCATTGTAAAACTACATTTTCACAGTTCCTGAACAACCTGATAGTTCATGCTGTACAGAGGCAGGGAAACACCATCGAGAGGGTTGTTGAATATTATAGGGGCAACATGATGTGAGATTTTACTTTCACCTAGTCTTTTTATCATATAAGACAAGAGGCTCAGCACTGAACCACTAGCTTCTGTTCCTTTTCTCTTATACTTCCCAGTTAATGGAATTCGGTTTATTGTCCAGTTCCATTTAGTCTTTCCTAAATTGAAGAAAGCCTTCTTGGCCAAGGAAAAGATCCAGAACTCACCAATAATCAACAGCTGGCTCCATGAGGGTCTCAGTTAGTTTTGGTTTTTTCAAAATCCTCAATATCTACACATTTTCTAGGTACTTATTGTGCCATTTTATAGCTATAAATCAGTCACATTATCATTTTGGGTCCTTCAAAGGACTTCTGATTATACTCAAAATGGAAAATTTCCCCCTTTCATCAAGGGAACCACATACATTTCTAAAGACCTGAATGTGGAGTAGCCACCCAGTCTAACAATAAGTCTTATGCCAGGGGTGTCCAATCTTTTGGCTTCAGTGGGCCACATTGGAAGAAGAATTGTCTTGGGCCATACATAAAATACGCTAACACTAACAATAGCTAATGAGCTAAAACAAAAATCACAAGAAAAATTTCATAATATTTTAAGAAAGTTTACGAATTTGTGTTGTGCCGCATTCGAAGCTGCCCTGGGCTGTGTGCTGCCCACGGGCCATGGGTTAGACAAGCTTGTGACATGCTCAAGATTTTGTTTTTTGTTTTTGTTTGTTTTGTTTTCTTTATGTAATATTTCACTTTATGAAAGAAAAGAAAATGGGCAGGTCTTAGAAATCTGACATTTGTAAGGTTATATTGGGTTGTCTCTGGGCTCATGAGAAACCGTGTTTACTCCTGGAAAGAGTGTCTACTTCTTTCCATTAACCTTATTTTTACCAATTTTCACAAAATCCAG
Seq C2 exon
CTGATTGTGGGCAAATGCAGGAAGAATTGGATCTGACAATCTCTGCAGAGACAAGAAAACAAACAGCATGTAAACCAGAGATTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-C5:NM_001735:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=24.1)
A:
NA
C2:
PF0175916=NTR=PU(9.0=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)