BtaEX0007295 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55093505-55098152:+
Coord C1 exon
chr3:55093505-55093544
Coord A exon
chr3:55096512-55096688
Coord C2 exon
chr3:55098053-55098152
Length
177 bp
Sequences
Splice sites
3' ss Seq
AAGAATGTCTCTCTCCCCAGGCA
3' ss Score
9.52
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGACTTGAGCTCCGGAAAGCGAAGTGTTCGCGCGAGAAAG
Seq A exon
GCATTTCTTGATGTAAGAAAACTTTGACTTGAAAGAGACTTCCCTGGTGGCTCAAATGGTAAACCATCTGCCTACAGTGTGGGAGACCCGGGTTCGATCCCTGGGTTGGCAAAATTCCCCGGAAAAGGAAATGGCAACCCACTCTTGCCTGGAAAATCCCATGGATGGAGAAGCCTG
Seq C2 exon
CATGTTTTTGGCCTGGGAGAGACTCTGCACCCTTAGCTGTAGACCTAAATTCCTGAAGACAGTTTGGGCTTCAAAAATCCTTGGACTCTCTACTTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505_MULTIEX1-1/4=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGAGCTCCGGAAAGC
R:
AGCAGAAGTAGAGAGTCCAAGGA
Band lengths:
140-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development