BtaEX0007293 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55093505-55118102:+
Coord C1 exon
chr3:55093505-55093544
Coord A exon
chr3:55098053-55098152
Coord C2 exon
chr3:55118044-55118102
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTTTTATTCTGTAGCAT
3' ss Score
9.28
5' ss Seq
GCTGTAGGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
GGACTTGAGCTCCGGAAAGCGAAGTGTTCGCGCGAGAAAG
Seq A exon
CATGTTTTTGGCCTGGGAGAGACTCTGCACCCTTAGCTGTAGACCTAAATTCCTGAAGACAGTTTGGGCTTCAAAAATCCTTGGACTCTCTACTTCTGCT
Seq C2 exon
AAAATGTCTTTGAGATTCAAAAATGCAAAACGAATTGAAGGCCTTGATAGCAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505-'0-6,'0-1,4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGAGCTCCGGAAAGC
R:
CATATATTGCTATCAAGGCCTTCAA
Band lengths:
99-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development