MmuEX0009448 @ mm9
Exon Skipping
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142364044-142381398:+
Coord C1 exon
chr3:142364044-142364139
Coord A exon
chr3:142369653-142369755
Coord C2 exon
chr3:142381340-142381398
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCTCTTTTCTCTAGCAT
3' ss Score
8.79
5' ss Seq
GCCGTAGGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GCTTCTGGATCCCCGAGTGCATTCCGCCAGGAACCCCGGCGACACCTAGCGACCTCCGGACTAAGGCCAGGGACGCATTGGAACCAGGAGAACGAT
Seq A exon
CATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTTCTTCGAAAGTCCTCGGACTCTGCACTTCTGCC
Seq C2 exon
AAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGATCCCCGAGTGCAT
R:
CACACATTGCTGTCCAGGCC
Band lengths:
154-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: