MmuALTD0002616-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142369653-142381398:+
Coord C1 exon
chr3:142369653-142369755
Coord A exon
chr3:142369756-142369759
Coord C2 exon
chr3:142381340-142381398
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
GATAACTTTATATCTTTCAGAAA
3' ss Score
8.17
Exon sequences
Seq C1 exon
CATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTTCTTCGAAAGTCCTCGGACTCTGCACTTCTGCC
Seq A exon
GTAG
Seq C2 exon
AAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCTTCGAAAGTCCTCGGA
R:
CACATTGCTGTCCAGGCCTTC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: