RnoALTD0015786-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248649440-248661655:+
Coord C1 exon
chr2:248649440-248649539
Coord A exon
chr2:248649540-248649543
Coord C2 exon
chr2:248661597-248661655
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
ACATTCAATATATATTTCAGAAA
3' ss Score
6.69
Exon sequences
Seq C1 exon
CATGCTTTTGGCCCAGAGGAGACTCTTCTCCCTTGGCTGCAGAGCAAAGCCCATAAAGACAATTTACTCTTCGAAAGTTCTCAGACTCTCCACTTCTGCC
Seq A exon
GTAG
Seq C2 exon
AAAATGGCTTTGAGATTCAAAAATGCCAAACGAATCGAAGGCCTGGACCAAAACGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426-3-2,4-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGAGCAAAGCCCATAA
R:
GCCTTCGATTCGTTTGGCATT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]