RnoEX0047944 @ rn6
Exon Skipping
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248644294-248661655:+
Coord C1 exon
chr2:248644294-248644563
Coord A exon
chr2:248649440-248649539
Coord C2 exon
chr2:248661597-248661655
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCTCTTTTCTCTAGCAT
3' ss Score
8.79
5' ss Seq
GCCGTAGGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GGCCACGCCGGGTCCCCTAGCCGGGAGCTTCACTGGCACAGTGAGCTCCAGGATTGGAGAATGCCGTAGCCAATCCGTATCCTCAGTTCTGATGCCCGAGCCAATCCCCGAACAGAGTCAAGCACCGCCTCCACCCCGCCCCCTCAATCCTCAGGAAGGTTTTTGTTGCAATCTGCTTCTGGGTCCTCGTGTGCTTTTCATCAGGGACCCCTGCGACACCTAGCGATCTCCGGACTAAAGCCAGGGCTGCATTCAAACCAGGAGAACGAC
Seq A exon
CATGCTTTTGGCCCAGAGGAGACTCTTCTCCCTTGGCTGCAGAGCAAAGCCCATAAAGACAATTTACTCTTCGAAAGTTCTCAGACTCTCCACTTCTGCC
Seq C2 exon
AAAATGGCTTTGAGATTCAAAAATGCCAAACGAATCGAAGGCCTGGACCAAAACGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCAGTTCTGATGCCCGA
R:
GTTTTGGTCCAGGCCTTCGAT
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]