GgaEX0008808 @ galGal4
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14073758-14078528:+
Coord C1 exon
chr8:14073758-14073833
Coord A exon
chr8:14075263-14075363
Coord C2 exon
chr8:14078470-14078528
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATTACTTATTTGTTATACAGGCA
3' ss Score
6.52
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTGCAAGTTAACTTTGCATGTTGAGTTTGGAAAGTTTTTATATCATCATGCTACTCCTCAGTATAAACTGACCAG
Seq A exon
GCATGCTTTTTGTTTCACGAAGCCTCTGTTGCCGTGGCATTGGAGCGTACCAACTACAAACAAATTTACTTTCTAGGTCCATCAAGCTTTCAGCCTCTGAT
Seq C2 exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188_MULTIEX1-4/5=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTTAACTTTGCATGTTGAGT
R:
CACACATTGCTATCAAGGCCT
Band lengths:
133-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]