MmuEX0009448 @ mm10
Exon Skipping
Gene
ENSMUSG00000040213 | Kyat3
Description
kynurenine aminotransferase 3 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142701051-142718434:+
Coord C1 exon
chr3:142701051-142701175
Coord A exon
chr3:142706689-142706791
Coord C2 exon
chr3:142718376-142718434
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCTCTTTTCTCTAGCAT
3' ss Score
8.79
5' ss Seq
GCCGTAGGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
TACAATCAGGAGGGTTCCTGCTGCACTCTGCTTCTGGATCCCCGAGTGCATTCCGCCAGGAACCCCGGCGACACCTAGCGACCTCCGGACTAAGGCCAGGGACGCATTGGAACCAGGAGAACGAT
Seq A exon
CATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTTCTTCGAAAGTCCTCGGACTCTGCACTTCTGCC
Seq C2 exon
AAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGCTGCACTCTGCTTC
R:
ACACATTGCTGTCCAGGCCTT
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types