GgaEX0008808 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15831945-15836715:+
Coord C1 exon
chr8:15831945-15832020
Coord A exon
chr8:15833450-15833550
Coord C2 exon
chr8:15836657-15836715
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATTACTTATTTGTTATACAGGCA
3' ss Score
6.52
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTGCAAGTTAACTTTGCATGTTGAGTTTGGAAAGTTTTTATATCATCATGCTACTCCTCAGTATAAACTGACCAG
Seq A exon
GCATGCTTTTTGTTTCACGAAGCCTCTGTTGCCGTGGCATTGGAGCGTACCAACTACAAACAAATTTACTTTCTAGGTCCATCAAGCTTTCAGCCTCTGAT
Seq C2 exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'6-8,'6-4,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTTAACTTTGCATGTTGAGT
R:
CACACATTGCTATCAAGGCCT
Band lengths:
133-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]