HsaEX0052802 @ hg19
Exon Skipping
Gene
ENSG00000213516 | RBMXL1
Description
RNA binding motif protein, X-linked-like 1 [Source:HGNC Symbol;Acc:25073]
Coordinates
chr1:89445139-89458459:-
Coord C1 exon
chr1:89458268-89458459
Coord A exon
chr1:89453935-89454034
Coord C2 exon
chr1:89445139-89449749
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTTATTTAATAGCAT
3' ss Score
7.45
5' ss Seq
GCTGTAGGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
AAAACACCCCTCATCCAGTCTCTTCCAGCCTAGAGATCCTGGCCTACCCCTCCGCCAAAGCGCGCACTGAGTGCAAACCCCAGAGTCAATCCCTGTCCCGGCTCCGCCCCCCGCGTCCGAATCCCGCCCAGCCGGGCCCTCAAGCCCAGTCGGGACTCGAGCCTAGGGAGGCGAGGTTCCCGCACCGGATAG
Seq A exon
CATGTTTTTGGCCCAGAGGAGCCTCTGCTCTCTTAGCGGTAGAGCAAAATTCCTGAAGACAATTTCTTCTTCCAAAATCCTCGGATTCTCTACTTCTGCT
Seq C2 exon
GAACATTCTGTTGTTTTCCTCTGCCATCTAGTGGCAAAAGAAAGTAATTTTCCTGGTTTTTTGAATGGATAGCCATACCTTAAAAAGCATCCAGATTGCGCAGTAGTGCTAGCGGCTTCGCGGTTCAGTCCTCCTAACTGACAGCCGCCACTGGTGCTGAGCTGCTAGGAAGCCCCTGTCGGCGAGCTTGTTGGAGCTTGAACCCACTGTCACCCCTCCGACTCACCGGCAAAAAAAAAAATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAACAGTATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATAAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTAGATGGAAAAGCCATCAAGGTGGAACAAGCCACCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213516-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=WD(100=18.2),PF080816=RBM1CTR=WD(100=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAGAGTCAATCCCTGTC
R:
TTAGGAGGACTGAACCGCGAA
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)