MmuALTD0002616-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040213 | Kyat3
Description
kynurenine aminotransferase 3 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142706689-142718434:+
Coord C1 exon
chr3:142706689-142706791
Coord A exon
NA
Coord C2 exon
chr3:142718376-142718434
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAGGT
5' ss Score
5.02
3' ss Seq
GATAACTTTATATCTTTCAGAAA
3' ss Score
8.17
Exon sequences
Seq C1 exon
CATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTTCTTCGAAAGTCCTCGGACTCTGCACTTCTGCC
Seq A exon
NA
Seq C2 exon
AAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-2-5,3-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCTTCGAAAGTCCTCGGA
R:
CACATTGCTGTCCAGGCCTTC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types