RnoEX0047945 @ rn6
Exon Skipping
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248649441-248662708:+
Coord C1 exon
chr2:248649441-248649539
Coord A exon
chr2:248661597-248661655
Coord C2 exon
chr2:248662564-248662708
Length
59 bp
Sequences
Splice sites
3' ss Seq
ACATTCAATATATATTTCAGAAA
3' ss Score
6.69
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGCTTTTGGCCCAGAGGAGACTCTTCTCCCTTGGCTGCAGAGCAAAGCCCATAAAGACAATTTACTCTTCGAAAGTTCTCAGACTCTCCACTTCTGCC
Seq A exon
AAAATGGCTTTGAGATTCAAAAATGCCAAACGAATCGAAGGCCTGGACCAAAACGTGTG
Seq C2 exon
GGTTGAATTTACCAAGTTGGCCGCGGATTCTTCTGTGGTGAATCTTGGACAAGGTTTTCCTGATATAACCCTTCCTTCATATGTACAAGAAGAATTGTCAAAGGCGGCATTTATTGATAACCTGAATCAATACACAAGGGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426_MULTIEX1-2/3=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(28.6=77.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTTTGGCCCAGAGGAGA
R:
TTCACCACAGAAGAATCCGCG
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]