GgaEX6044311 @ galGal4
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14075263-14079945:+
Coord C1 exon
chr8:14075263-14075363
Coord A exon
chr8:14078470-14078528
Coord C2 exon
chr8:14079801-14079945
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTATATTTTGATCTTGCAGACA
3' ss Score
9.47
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GCATGCTTTTTGTTTCACGAAGCCTCTGTTGCCGTGGCATTGGAGCGTACCAACTACAAACAAATTTACTTTCTAGGTCCATCAAGCTTTCAGCCTCTGAT
Seq A exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
Seq C2 exon
GGTTGAATTTACAAAGGTGGCAGCAGATCCCTCAATTGTTAATCTTGGTCAAGGCCTTCCTGATATATGCCCTCCCAGCTATGTTAAAGAAGAGCTGGCAAAAGCAGCAGCAGTTGACAGACTGAACCAGTACACACGAGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'8-9,'8-8,12-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=77.6)
Main Skipping Isoform:
ENSGALT00000009984fB955
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATCAAGCTTTCAGCCT
R:
TCTGTCAACTGCTGCTGCTTT
Band lengths:
147-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]