BtaEX0007297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55098053-55119023:+
Coord C1 exon
chr3:55098053-55098152
Coord A exon
chr3:55118044-55118102
Coord C2 exon
chr3:55118879-55119023
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCAATTTTATATATTTCAGAAA
3' ss Score
8.07
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CATGTTTTTGGCCTGGGAGAGACTCTGCACCCTTAGCTGTAGACCTAAATTCCTGAAGACAGTTTGGGCTTCAAAAATCCTTGGACTCTCTACTTCTGCT
Seq A exon
AAAATGTCTTTGAGATTCAAAAATGCAAAACGAATTGAAGGCCTTGATAGCAATATATG
Seq C2 exon
GATTGAATTTACCAAACTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCCTTCCAGATATATCCCCTCCTGTATATGTAAAGGAAGAATTATCCAAGATTGCAGCAATTGATAATCTGAATCAGTACACACGGGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505_MULTIEX1-4/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(9.9=77.6)
Main Skipping Isoform:
ENSBTAT00000000643fB1395
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTGCACCCTTAGCTGT
R:
GAAGGCCTTGGCCAAGATTCA
Band lengths:
140-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development