HsaEX0012851 @ hg19
Exon Skipping
Gene
ENSG00000137944 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:33238]
Coordinates
chr1:89434353-89454038:-
Coord C1 exon
chr1:89453935-89454038
Coord A exon
chr1:89435092-89435150
Coord C2 exon
chr1:89434353-89434497
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCAATATTTATATATTTCAGAAA
3' ss Score
7.94
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATAGCATGTTTTTGGCCCAGAGGAGCCTCTGCTCTCTTAGCGGTAGAGCAAAATTCCTGAAGACAATTTCTTCTTCCAAAATCCTCGGATTCTCTACTTCTGCT
Seq A exon
AAAATGTCACTGAAATTCACAAATGCAAAACGGATTGAAGGACTTGATAGTAATGTGTG
Seq C2 exon
GATTGAATTTACCAAATTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCTTTCCAGATATATCCCCTCCTACATATGTAAAAGAAGAATTATCAAAGATTGCAGCAATCGATAGCCTGAATCAGTATACACGAGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-'2-6,'2-5,3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(19.1=77.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTTTGGCCCAGAGGAGC
R:
CAGAAGGGTCTGCAGCCAATT
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)