GgaEX6044311 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15833450-15838132:+
Coord C1 exon
chr8:15833450-15833550
Coord A exon
chr8:15836657-15836715
Coord C2 exon
chr8:15837988-15838132
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTATATTTTGATCTTGCAGACA
3' ss Score
9.47
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GCATGCTTTTTGTTTCACGAAGCCTCTGTTGCCGTGGCATTGGAGCGTACCAACTACAAACAAATTTACTTTCTAGGTCCATCAAGCTTTCAGCCTCTGAT
Seq A exon
ACAATGGCCTTTAGACACAAAAACACAAGACGAATTGAAGGCCTTGATAGCAATGTGTG
Seq C2 exon
GGTTGAATTTACAAAGGTGGCAGCAGATCCCTCAATTGTTAATCTTGGTCAAGGCCTTCCTGATATATGCCCTCCCAGCTATGTTAAAGAAGAGCTGGCAAAAGCAGCAGCAGTTGACAGACTGAACCAGTACACACGAGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'8-9,'8-8,11-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(9.9=77.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATCAAGCTTTCAGCCT
R:
TCTGTCAACTGCTGCTGCTTT
Band lengths:
147-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]