HsaEX0012851 @ hg38
Exon Skipping
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88968670-88992776:-
Coord C1 exon
chr1:88992585-88992776
Coord A exon
chr1:88969409-88969467
Coord C2 exon
chr1:88968670-88968814
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCAATATTTATATATTTCAGAAA
3' ss Score
7.94
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAAACACCCCTCATCCAGTCTCTTCCAGCCTAGAGATCCTGGCCTACCCCTCCGCCAAAGCGCGCACTGAGTGCAAACCCCAGAGTCAATCCCTGTCCCGGCTCCGCCCCCCGCGTCCGAATCCCGCCCAGCCGGGCCCTCAAGCCCAGTCGGGACTCGAGCCTAGGGAGGCGAGGTTCCCGCACCGGATAG
Seq A exon
AAAATGTCACTGAAATTCACAAATGCAAAACGGATTGAAGGACTTGATAGTAATGTGTG
Seq C2 exon
GATTGAATTTACCAAATTGGCTGCAGACCCTTCTGTTGTGAATCTTGGCCAAGGCTTTCCAGATATATCCCCTCCTACATATGTAAAAGAAGAATTATCAAAGATTGCAGCAATCGATAGCCTGAATCAGTATACACGAGGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-'2-9,'2-7,7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(16.5=77.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAGAGTCAATCCCTGTC
R:
GGGTCTGCAGCCAATTTGGTA
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development