DreEX6011813 @ danRer10
Exon Skipping
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32672875-32674489:-
Coord C1 exon
chr5:32674385-32674489
Coord A exon
chr5:32674218-32674276
Coord C2 exon
chr5:32672875-32673022
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTGATTACGCAGGGC
3' ss Score
8.11
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
AAAACCTGCTGTAAAGTGTCTTGAAACACTGTAATGTGGAGGAGAGTGGCGGTGTATGGACCTTCGCTCTCAGTCAGATTAGCAATCGCAGGTTTTCATGAAAAG
Seq A exon
GGCATCATGTCTCGTAGGTTGCACGCGAGAAGACTTGAAGGAATTGACAAAAATATATG
Seq C2 exon
GGTGGAGTTCACTCAGCTGGCTGCTGACTATAAGGCTGTGAACTTGGGCCAAGGCTTCCCTGATTTCTCTCCTCCCAGTTTCATTCAGGAGGCCTTCTGCAATGCACTGACTGGAGGTTTCCGCATGCACCAGTACACGCGTGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACCTTCGCTCTCAGTCA
R:
GGCCTCCTGAATGAAACTGGG
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]