RnoEX0047937 @ rn6
Exon Skipping
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8757972-8785756:-
Coord C1 exon
chr3:8785042-8785756
Coord A exon
chr3:8762794-8762852
Coord C2 exon
chr3:8757972-8758119
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTCTCTGTACCCAGCTC
3' ss Score
9.22
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTGCCAGGACAAGTGCAGCCTGGGGACCGTGGCGGAAACTCAAGTGAAAGGCACGCACGGAAGCCGGGCGCGCGTGATTGGGTTCAGTGAGGTGACAGCGCGCGTCCCTTTTTATACTCGACCCACTCAACAAGGCCCGCCGCTCTCGGCCGCCACGCAGGCAGCCCTAGTCCTGTTTCTGGCTACCCACAGCCAGTCGCGCCGTGGGTCTTTGGCGCCTTGTTTTGTCTGTCACGGTACCGCTTCTTAGGTCTCCGCCCCGGAAGTGATATCACCGAGCGCAAACCCGGGGGTCCCTAAGGCTGCCCCCCCCCCCCCCCGGCGTCTTTAAAGGGAACTCGCAGCTTTGCACTGACAGTGCTCTTGAGCCAAGTTGCTTCTGGGCGGAAGTAGTCCATCTAGGGCTCGGCCTCTTTAAAGAAACAGACTTCTGCAACCTTGGGACTACGTTTGGGGTCGCCGGCTATTGGACGGAGCAGCGCAATTGTTAGCTGAAGCAG
Seq A exon
CTCACCATGACCAAACGGCTGCAGGCTCGGAGGCTGGACGGGATTGATCAAAACCTCTG
Seq C2 exon
GGTGGAGTTTGGCAAACTGACCAAGGAGTATGACGTCGTGAACTTGGGTCAGGGCTTCCCTGACTTCTCGCCTCCGGACTTTGCAACGCAAGCTTTTCAGCAGGCTACCAGTGGGAACTTCATGCTCAACCAGTACACCAGGGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097_MULTIEX1-3/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCGCAATTGTTAGCTG
R:
ACTGGTAGCCTGCTGAAAAGC
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]