HsaEX0012836 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131604933-131644315:-
Coord C1 exon
chr9:131644176-131644315
Coord A exon
chr9:131607632-131607690
Coord C2 exon
chr9:131604933-131605080
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCACTTGTTCGTCTCCAGCTC
3' ss Score
8.67
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTTCGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG
Seq A exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
Seq C2 exon
GGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTCCCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCAGTACACCAAGACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'2-16,'2-13,8-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGGGTGTACTTGGGAA
R:
TGAAAGGCTTCCACGGCAAAG
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)