BtaEX6046542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000036101 | CCBL1
Description
Bos taurus cysteine conjugate-beta lyase, cytoplasmic (CCBL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077978]
Coordinates
chr11:99364885-99411162:-
Coord C1 exon
chr11:99411139-99411162
Coord A exon
chr11:99367166-99367224
Coord C2 exon
chr11:99364885-99365035
Length
59 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTCTGTTGTCTCCAGCTC
3' ss Score
8.7
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAGGGTGAAGCGGCGGAGGCGGGG
Seq A exon
CTCACCATGGCTAAACGGCTGCAGGCTCGAAGGCTGGACGGGATCGACCACAACCCATG
Seq C2 exon
GGTGGAATTTGTCCAACTGGCCAGCGAGGAGGCTGATGTTGTAAATTTGGGCCAAGGCTTCCCAGACTTCTCACCCCCAGAGTTCGCCGTGGAAGCCTTTCAGCACGCCGTCAGCGGAGACTTCATGCTTAACCAGTACACGAAAGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000036101-'0-15,'0-11,11-15=AN
Average complexity
A_C2
Mappability confidence:
100%=91=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(14.9=76.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTGAAGCGGCGGAG
R:
GCGTGCTGAAAGGCTTCCA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]